PhyloGenes 3.0 Genomes Stats
This page includes information for the 40 plant genomes included in PhyloGenes v3.0.
Detailed information about the reference genomes and proteins from PANTHER 16.0 that are included in PhyloGenes can be found at PANTHERDB.
To cite PANTHER, use this reference.
Scientific Name | Phylogenes Displayed Name | Genome Version | UniProt | Total ACTUAL number of protein coding genes (PCG) | Total number of protein coding genes (PCG) in PANTHER families | % of Genes in PANTHER v15 |
|---|---|---|---|---|---|---|
Amborella trichopoda | A. trichopoda | 2020_04 | 27305 | 17050 | 62% | |
Arabidopsis thaliana | A. thaliana | 2020_04 | 27462 | 24494 | 89% | |
Brachypodium distachyon | purple false brome | 2020_04 | 34230 | 26494 | 77% | |
Brassica napus | rapeseed | 2020_04 | 60086 | 46198 | 77% | |
Brassica rapa subsp. Pekinensis | Chinese cabbage | 2020_04 | 40737 | 35745 | 88% | |
Capsicum annuum | pepper | 2020_04 | 34922 | 29112 | 83% | |
Chlamydomonas reinhardtii | C. reinhardtii | 2020_04 | 17614 | 11729 | 67% | |
Citrus sinensis | orange | 2020_04 | 27812 | 23046 | 83% | |
Cucumis sativus | cucumber | 2020_04 | 23718 | 19139 | 81% | |
Erythranthe guttata | yellow monkeyflower | 2020_04 | 27380 | 24662 | 90% | |
Eucalyptus grandis | flooded gum | 2020_04 | 36343 | 30291 | 83% | |
Glycine max | soybean | 2020_04 | 55846 | 48933 | 88% | |
Gossypium hirsutum | cotton | 2020_04 | 60304 | 56265 | 93% | |
Helianthus annuus | sunflower | 2020_04 | 51034 | 39295 | 77% | |
Hordeum vulgare | barley | 2020_04 | 35557 | 27563 | 78% | |
Juglans regia | walnut | 2020_04 | 35604 | 33295 | 94% | |
Lactuca sativa | lettuce | 2020_04 | 37819 | 29681 | 78% | |
Manihot esculenta | cassava | 2020_04 | 32767 | 27974 | 85% | |
Medicago truncatula | barrelclover | 2020_04 | 49634 | 33270 | 67% | |
Musa acuminata | banana | 2020_04 | 36365 | 29083 | 80% | |
Nelumbo nucifera | sacred lotus | 2020_04 | 23870 | 22775 | 95% | |
Nicotiana tabacum | tobacco | 2020_04 | 61272 | 54774 | 89% | |
Oryza sativa | rice | 2020_04 | 43659 | 27108 | 62% | |
Ostreococcus tauri | O. tauri | 2020_04 | 7743 | 5715 | 74% | |
Phoenix dactylifera | date palm | 2020_04 | 25486 | 24320 | 95% | |
Physcomitrella patens | P. patens | 2020_04 | 30843 | 19608 | 64% | |
Populus trichocarpa | black cottonwood | 2020_04 | 42532 | 34650 | 81% | |
Prunus persica | peach | 2020_04 | 26642 | 23227 | 87% | |
Ricinus communis | castor bean | 2020_04 | 31127 | 21312 | 68% | |
Selaginella moellendorffii | S. moellendorffii | 2020_04 | 33115 | 26479 | 80% | |
Setaria italica | foxtail millet | 2020_04 | 52335 | 38985 | 74% | |
Solanum lycopersicum | tomato | 2020_04 | 34647 | 25697 | 74% | |
Solanum tuberosum | potato | 2020_04 | 38810 | 26145 | 67% | |
Sorghum bicolor | sorghum | 2020_04 | 33693 | 26751 | 79% | |
Spinacia oleracea | spinach | 2020_04 | 21479 | 17566 | 82% | |
Theobroma cacao | cocoa | 2020_04 | 28963 | 22390 | 77% | |
Triticum aestivum | wheat | 2020_04 | 102837 | 93889 | 91% | |
Vitis vinifera | grape | 2020_04 | 29873 | 23996 | 80% | |
Zea mays | corn | 2020_04 | 39385 | 34071 | 87% | |
Zostera marina | eelgrass | 2020_04 | 20330 | 17522 | 86% |