PhyloGenes 4.0 Genomes Stats
- Tanya Berardini
Owned by Tanya Berardini
This page includes information for the 40 plant genomes included in PhyloGenes v4.0.
Detailed information about the reference genomes and proteins from PANTHER 17.0 that are included in PhyloGenes can be found at PANTHERDB.
To cite PANTHER, use this reference.
| Scientific Name | Phylogenes Displayed Name | Genome Version | UniProt Reference Version | Total ACTUAL number of protein coding genes (PCG) | Total number of protein coding genes (PCG) in PANTHER families | % of Genes in PANTHER v17 |
|---|---|---|---|---|---|---|
| Amborella trichopoda | A. trichopoda | AMTR1.0 | 2021_03 | 27312 | 15807 | 58% |
| Arabidopsis thaliana | A. thaliana | TAIR10.1 | 2021_03 | 27430 | 24356 | 89% |
| Brachypodium distachyon | purple false brome | Brachypodium_distachyon_v3.0 | 2021_03 | 34230 | 26342 | 77% |
| Brassica napus | rapeseed | AST_PRJEB5043_v1 | 2021_03 | 60104 | 42993 | 72% |
| Brassica rapa subsp. Pekinensis | Chinese cabbage | Brapa_1.0 | 2021_03 | 40743 | 34693 | 85% |
| Capsicum annuum | pepper | ASM51225v2 | 2021_03 | 35082 | 26543 | 76 |
| Chlamydomonas reinhardtii | C. reinhardtii | Chlamydomonas_reinhardtii_v5.5 | 2021_03 | 17607 | 12107 | 69 |
| Citrus sinensis | orange | Citrus_sinensis_v1.0 | 2021_03 | 27844 | 19630 | 70 |
| Cucumis sativus | cucumber | Cucumber_9930_V3 | 2021_03 | 23714 | 18187 | 77 |
| Erythranthe guttata | yellow monkeyflower | Mimgu1_0 | 2021_03 | 27391 | 23150 | 85 |
| Eucalyptus grandis | flooded gum | Egrandis1_0 | 2021_03 | 36360 | 28760 | 79 |
| Glycine max | soybean | Glycine_max_v2.1 | 2021_03 | 55853 | 47073 | 84 |
| Gossypium hirsutum | cotton | ASM98774v1 | 2021_03 | 60410 | 55025 | 91 |
| Helianthus annuus | sunflower | HanXRQr2.0-SUNRISE | 2021_03 | 51034 | 36731 | 72 |
| Hordeum vulgare subsp. vulgare | barley | IBSC v2 | 2021_03 | 35634 | 25469 | 71 |
| Juglans regia | walnut | Walnut 2.0 | 2021_03 | 30211 | 28266 | 94 |
| Klebsormidium nitens | K. nitens | 2021_03 | 16168 | 9200 | 57 | |
| Lactuca sativa | lettuce | Lsat_Salinas_v7 | 2021_03 | 37818 | 27650 | 73 |
| Manihot esculenta | cassava | Manihot esculenta v6 | 2021_03 | 32776 | 27414 | 84 |
| Marchantia polymorpha | common liverwort | 2021_03 | 19114 | 11112 | 58 | |
| Medicago truncatula | barrelclover | MedtrA17_4.0 | 2021_03 | 49614 | 32286 | 65 |
| Musa acuminata subsp. malaccensis | banana | Musa_acuminata_v2 | 2021_03 | 36378 | 27117 | 75 |
| Nelumbo nucifera | sacred lotus | Chinese Lotus 1.1 | 2021_03 | 23876 | 22443 | 94 |
| Nicotiana tabacum | tobacco | Ntab-TN90 | 2021_03 | 61314 | 53279 | 87 |
| Oryza sativa | rice | IRGSP-1.0 | 2021_03 | 43658 | 24989 | 57 |
| Physcomitrella patens | P. patens | Phypa V3 | 2021_03 | 31356 | 19299 | 62 |
| Populus trichocarpa | black cottonwood | Pop_tri_v3 | 2021_03 | 42532 | 32759 | 77 |
| Prunus persica | peach | Prunus_persica_NCBIv2 | 2021_03 | 26645 | 22835 | 86 |
| Ricinus communis | castor bean | JCVI_RCG_1.1 | 2021_03 | 31129 | 20030 | 64 |
| Selaginella moellendorffii | S. moellendorffii | v1.0 | 2021_03 | 33117 | 25897 | 78 |
| Setaria italica | foxtail millet | Setaria_italica_v2.0 | 2021_03 | 35352 | 26044 | 74 |
| Solanum lycopersicum | tomato | SL3.0 | 2021_03 | 34652 | 23848 | 69 |
| Solanum tuberosum | potato | SolTub_3.0 | 2021_03 | 38823 | 24492 | 63 |
| Sorghum bicolor | sorghum | Sorghum_bicolor_NCBIv3 | 2021_03 | 33714 | 26429 | 78 |
| Spinacia oleracea | spinach | Spinach-1.0.3 | 2021_03 | 21489 | 16741 | 78 |
| Theobroma cacao | cocoa | Theobroma_cacao_20110822 | 2021_03 | 28970 | 21816 | 75 |
| Triticum aestivum | wheat | iwgsc_refseqv1.0 | 2021_03 | 103263 | 92315 | 89 |
| Vitis vinifera | grape | 12X | 2021_03 | 29872 | 21834 | 73 |
| Zea mays | corn | Zm-B73-REFERENCE-NAM-5.0 | 2021_03 | 39389 | 31582 | 80 |
| Zostera marina | eelgrass | Zosma_marina.v.2.1 | 2021_03 | 20331 | 16470 | 81 |