PhyloGenes 4.0 Genomes Stats

This page includes information for the 40 plant genomes included in PhyloGenes v4.0.

Detailed information about the reference genomes and proteins from PANTHER 17.0 that are included in PhyloGenes can be found at PANTHERDB.

To cite PANTHER, use this reference.

Scientific Name	Phylogenes Displayed Name	Genome Version	UniProt Reference Version	Total ACTUAL number of protein coding genes (PCG)	Total number of protein coding genes (PCG) in PANTHER families	% of Genes in PANTHER v17

Scientific Name	Phylogenes Displayed Name	Genome Version	UniProt Reference Version	Total ACTUAL number of protein coding genes (PCG)	Total number of protein coding genes (PCG) in PANTHER families	% of Genes in PANTHER v17
Amborella trichopoda	A. trichopoda	AMTR1.0	2021_03	27312	15807	58%
Arabidopsis thaliana	A. thaliana	TAIR10.1	2021_03	27430	24356	89%
Brachypodium distachyon	purple false brome	Brachypodium_distachyon_v3.0	2021_03	34230	26342	77%
Brassica napus	rapeseed	AST_PRJEB5043_v1	2021_03	60104	42993	72%
Brassica rapa subsp. Pekinensis	Chinese cabbage	Brapa_1.0	2021_03	40743	34693	85%
Capsicum annuum	pepper	ASM51225v2	2021_03	35082	26543	76
Chlamydomonas reinhardtii	C. reinhardtii	Chlamydomonas_reinhardtii_v5.5	2021_03	17607	12107	69
Citrus sinensis	orange	Citrus_sinensis_v1.0	2021_03	27844	19630	70
Cucumis sativus	cucumber	Cucumber_9930_V3	2021_03	23714	18187	77
Erythranthe guttata	yellow monkeyflower	Mimgu1_0	2021_03	27391	23150	85
Eucalyptus grandis	flooded gum	Egrandis1_0	2021_03	36360	28760	79
Glycine max	soybean	Glycine_max_v2.1	2021_03	55853	47073	84
Gossypium hirsutum	cotton	ASM98774v1	2021_03	60410	55025	91
Helianthus annuus	sunflower	HanXRQr2.0-SUNRISE	2021_03	51034	36731	72
Hordeum vulgare subsp. vulgare	barley	IBSC v2	2021_03	35634	25469	71
Juglans regia	walnut	Walnut 2.0	2021_03	30211	28266	94
Klebsormidium nitens	K. nitens	ASM70883v1	2021_03	16168	9200	57
Lactuca sativa	lettuce	Lsat_Salinas_v7	2021_03	37818	27650	73
Manihot esculenta	cassava	Manihot esculenta v6	2021_03	32776	27414	84
Marchantia polymorpha	common liverwort	Marchanta_polymorpha_v1	2021_03	19114	11112	58
Medicago truncatula	barrelclover	MedtrA17_4.0	2021_03	49614	32286	65
Musa acuminata subsp. malaccensis	banana	Musa_acuminata_v2	2021_03	36378	27117	75
Nelumbo nucifera	sacred lotus	Chinese Lotus 1.1	2021_03	23876	22443	94
Nicotiana tabacum	tobacco	Ntab-TN90	2021_03	61314	53279	87
Oryza sativa	rice	IRGSP-1.0	2021_03	43658	24989	57
Physcomitrella patens	P. patens	Phypa V3	2021_03	31356	19299	62
Populus trichocarpa	black cottonwood	Pop_tri_v3	2021_03	42532	32759	77
Prunus persica	peach	Prunus_persica_NCBIv2	2021_03	26645	22835	86
Ricinus communis	castor bean	JCVI_RCG_1.1	2021_03	31129	20030	64
Selaginella moellendorffii	S. moellendorffii	v1.0	2021_03	33117	25897	78
Setaria italica	foxtail millet	Setaria_italica_v2.0	2021_03	35352	26044	74
Solanum lycopersicum	tomato	SL3.0	2021_03	34652	23848	69
Solanum tuberosum	potato	SolTub_3.0	2021_03	38823	24492	63
Sorghum bicolor	sorghum	Sorghum_bicolor_NCBIv3	2021_03	33714	26429	78
Spinacia oleracea	spinach	Spinach-1.0.3	2021_03	21489	16741	78
Theobroma cacao	cocoa	Theobroma_cacao_20110822	2021_03	28970	21816	75
Triticum aestivum	wheat	iwgsc_refseqv1.0	2021_03	103263	92315	89
Vitis vinifera	grape	12X	2021_03	29872	21834	73
Zea mays	corn	Zm-B73-REFERENCE-NAM-5.0	2021_03	39389	31582	80
Zostera marina	eelgrass	Zosma_marina.v.2.1	2021_03	20331	16470	81