- My Apollo window has frozen. What do i do?
- Try reloading your browser window.
- For Chrome: Shift Command R
- For Firefox: Ctrl+R
- For Safari: shift+reload
- Some data tracks are very slow to load.
- The way JBrowse works within Apollo, the first time your load up a track it might take a while. But once loaded, any successive loads will be quicker.
- What is the meaning of the lower case letters in the nucleotide sequence?
- These indicate regions of low complexity. They have not impact/implication with respect to annotation.
- Is it possible to know which organism is the source for a particular protein alignment (in the Protein Alignment track)?
- By right clicking on the alignment, and then selecting 'View details.' You'll see the GenBank accession in the id section and can search for that at NCBI.
- Tell me more about the tracks I see.
Track name | Description of data |
Col-CC_Genomic_Annotations_Data | Result of NCBI Eukaryotic Annotation Pipeline |
Gnomon Models | one of the inputs into the NCBI Pipeline |
| Protein alignment | proteins from other species aligned to v12 protein sequences |
| TSA alignment | computationall assembled transcripts from isoseq experiments aligned to v12 transcript sequences |
(AT-Col-CC-Liftoff-from-TAIR10.1) | (coming: v11 models mapped to v12 reference using Liftoff) |
| (RNA seq tracks) | (coming) |
| (long read seq tracks) | coming |