Data Sources

Owned by Tanya Berardini
Last updated: Apr 04, 2024
1 min read

This page gives information on where the data in TAIR come from, and what datasets are not yet in TAIR.


Datasets in TAIR:Sources
Plant Structure OntologyPlanteome
Cereon SNPsCereon Genomics
Classical genetic mapMeinke Lab Website
ClonesAtDB, GenBank, ABRC, user submissions
Community (people & organizations)ABRC, AtDB, NASC, user submissions
Growth & Developmental Stages OntologiesPlanteome
DNA sequencesGenBank, AtDB, TIGR, IMA
Expression DataAFGC, Websites, Literature, ATGenExpress, user submissions, NASCArrays
Gene FamiliesUser submissions, Websites
Gene Ontology Controlled VocabulariesGene Ontology Consortium
Gene Ontology Functional AnnotationsTAIR, Literature, UniProt
Gene Structure AnnotationsTIGR, TAIR, user submissions
GenesTIGR, GenBank, AtDB, Kazusa, Meinke Lab Website, Literature, user submissions
ImagesABRC, Literature, user submissions
LibrariesABRC, GenBank
Markers (physical and genetic)AtDB, NASC, user submissions
Metabolic pathwaysMetaCyc, literature
PhenotypesAtDB, ABRC, Literature
Physical mapsUser submissions, Websites, Literature, AtDB
PolymorphismsStanford Genome Center, SALK, Arabidopsis Tilling Project, User submissions
ProteinsTIGR, TAIR
Protein subcellular localizationsLiterature, Websites, user submissions
ProtocolsUser submissions
PublicationsAtDB, PubMed, Agricola, Biosis
RI mapNASC, user submissions
StocksNASC, ABRC
VectorsABRC, GenBank
Datasets not in TAIRSources
Genetic interactionsLiterature
Metabolic profilingLiterature
Physical interactionsLiterature, Websites
Signal transduction pathwaysLiterature
Tryptic digest patternsWebsites