...
By right clicking on the alignment, and then selecting 'View details.' You'll see the GenBank accession in the id section and can search for that at NCBI.
...
Where is the track metadata?
Track name | Description of data |
Col-CC_Genomic_Annotations_Data | Result of NCBI Eukaryotic Annotation Pipeline |
Gnomon Models | One of the inputs into the NCBI Pipeline. "Gnomon annotation of the genomic sequence. Sequence identifiers are provided as accession.version for the genomic sequences and Gnomon identifiers for the Gnomon models:gene.XXX for genes, GNOMON.XXX.m for transcripts and GNOMON.XXX.p for proteins. These identifiers are NOT universally unique. They are unique per annotation release only." (from NCBI documentation) |
| Protein alignment | proteins from other species aligned to v12 protein sequences. "Alignments of cDNAs, ESTs and TSAs from other species to the genomic sequence(s). These alignments may have been used as evidence for gene prediction by the annotation pipeline." (from NCBI documentation) |
| TSA alignment | computationally assembled transcripts from isoseq experiments aligned to v12 transcript sequences |
AT-Col-CC-Liftoff-from-TAIR10.1 | v11 models mapped to v12 reference using Liftoff |
| Col-CC Same Species | "Alignments of same-species cDNAs, ESTs and TSAs to the genomic sequence(s). These alignments were used as evidence for gene prediction by the annotation pipeline. Sequence identifiers are provided as accession.version." (from NCBI documentation) |
| Known Reference Sequences | "Alignments of the annotated Known RefSeq transcripts (identified with accessions prefixed with NM_ and NR_) to the genome." (from NCBI documentation) |
| Model Reference Sequences | "Alignments of the annotated Model RefSeq transcripts (identified with accessions prefixed with XM_ and XR_) to the genome." (from NCBI documentation) |
| RNA seq tracks | Some tracks are already present. Name is based on the GenBank record, for example, SRR1019221. You can link to that record using this base URL for more information on the experiment: https://www.ncbi.nlm.nih.gov/sra/SRR1019221 (more coming) |
| (long read seq tracks) | (coming) |
...