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Project goal: To produce an improved structural annotation of the A. thaliana Col-0 genome based on a 2022 community consensus genome assembly
Project phases:
Timeline: Roughly 14 months, starting Nov. 2022
Genome Assembly
Automated Annotation
Manual Review
NCBI/RefSeq Submission
Dissemination/Integration
Schneeberger group to submit to NCBI
Schneeberger group to complete CC assembly
NCBI to run annotation pipeline
NCBI to provide gene lists for review
TAIR to set up review training
Community to conduct manual review
TAIR to test NCBI submission with dummy data
TAIR to submit final annotation to GenBank
TAIR to run QC checks on final annotation
Write manuscript about community effort
Poster and/or talk at conference
Poster and/or talk at conference
Participants:
- globally distributed scientists (UK, Germany, China, Canada, US, so far)
- varying areas of expertise relevant to different phases of the project, not all participants are involved in all phases
- TAIR will provide coordination/project management and hosting of the software for manual review