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- The specific URL of the page you were on when you encountered the problem. If you send a screenshot please include the address bar with the URL in the image.
- A description of the problem sufficiently detailed for us to reproduce the action.
- What operating system/browser you are using.
Genome Annotations
What is the difference between TAIR10 and TAIR10.1 genomes?
The current version of the Arabidopsis reference genome is TAIR10.1. The difference between TAIR10 (released in 2010) and TAIR10.1 is the mitochondrial genome sequence was updated from the C24 genome to Col-0 genome(Sloan, 2018).
Where can I find a list of coordinates for all genes (including UTRs, introns and exons) and other transcripts?
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- Some gene models may not have been predicted by our annotation process because of limitations of the gene prediction software. If you are using BLAST or another sequence similarity search tool on TAIR, choose AGI whole genome (BAC clones), or GenBank whole genome (BAC clones) datasets. Unannotated genes will not be found in AGI transcript, protein, cds or gene data sets.
- "Missing" genes may reside in one of the few remaining known gaps in the sequence including highly repetitive regions that are difficult to sequence. See:Genome Update pages for information about gaps, incomplete clone sequences and genome monitoring status.
- If you have sequenced a gene that is not in the database, please contact TAIR to update gene structural and functional data based on experimental evidence.
- Some genes which existed in earlier annotation releases may have been obsoleted, or merged or split into 2 new gene models. To find out when a gene was added or removed, or whether a gene has been split or merged, try the TAIR locus history search
How can I obtain a list of functional categories for a set of genes?
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Bulk download functions have been integrated into the Gene Search and Protein Search. See the Bulk Downloading Gene Data help document for specifics.
Where can I get the most up to date TAIR data sets?
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