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Users can now search in bulk and upload a list of AGI Locus identifiers. This feature can also be used as a starting point for bulk downloading of data (see Bulk Downloading Gene Data help or our YouTube Tutorial).
- Paste or upload a list of AGI identifiers (one ID per row)
- Apply any additional search parameters to the gene list or click submit
- On the results screen at the top will be a number of options for retrieving data for all or a subset of the results
- Get GO annotations- retrieve Gene Ontology annotations
- Get PO annotations-retrieve Plant Ontology annotations
- Get Sequences-retrieve FASTA formatted sequences
- Get Gene Descriptions- retrieves gene summaries and aliases
- Get Locus History- retrieves history of loci such as create date, merges , deletes etc.
- Get Microarray Elements- retrieves corresponding microarray element IDs
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Lets you search entities by their position on a particular map and is to be used with the Range parameters. Currently, you can search on only one map type at a time. . The options are Reference Assembly (currently Araport11 which corresponds to the TAIR9 genome assembly), physical (BACs) and genetic maps.
Range
Lets you specify a range search by the upper and lower bounds. The value is interpreted based on the selected range units. You can specify the range by physical distance (kb). When you select "Between" from the drop-down menu, your search will be within the range defined by two entities or positions on a particular map.