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Detailed information about the reference genomes and proteins from PANTHER 15.0 that are included in PhyloGenes can be found at PANTHERDB.
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| Scientific Name | Phylogenes Displayed Name | Genome Version | UniProt Reference Version | Total ACTUAL number of protein coding genes (PCG) | Total number of protein coding genes (PCG) in PANTHER families | % of Genes in PANTHER v14.1v15 | |
|---|---|---|---|---|---|---|---|
| Amborella trichopoda | A. trichopoda | AMTR1.0 | 2019_04 | 27296 | 17202 | 63% | |
| Arabidopsis thaliana | A. thaliana | TAIR10.1 | 2019_04 | 27416 | 24443 | 89% | |
| Brachypodium distachyon | purple false brome | Brachypodium_distachyon_v3.0 | 2019_04 | 34295 | 26459 | 77% | |
| Brassica napus | rapeseed | AST_PRJEB5043_v1 | 2019_04 | 60072 | 45821 | 76% | |
| Brassica rapa subsp. Pekinensis | Chinese cabbage | Brapa_1.0 | 2019_04 | 4072940733 | 3540435591 | 87% | |
| Capsicum annuum | pepper | ASM51225v2 | 2019_04 | 34776 | 28476 | 82% | |
| Chlamydomonas reinhardtii | C. reinhardtii | Chlamydomonas_reinhardtii_v5.5 | 2019_04 | 1760817614 | 1098511712 | 62%66% | |
| Citrus sinensis | orange | Citrus_sinensis_v1.0 | 2019_04 | 2772329470 | 2255824254 | 81%82% | |
| Cucumis sativus | cucumber | ASM407v2 | 2019_04 | 2370223710 | 1893819125 | 80%81% | |
| Erythranthe guttata | E. guttata | Mimgu1yellow monkeyflower | Mimgu1_0 | 2019_04 | 27394 | 24732 | 90% |
| Eucalyptus grandis | flooded gum | Egrandis1_0 | 2019_04 | 2735636512 | 2442430271 | 89%83% | |
| Glycine max | soybean | Glycine_max_v2.01 | 2019_04 | 5662655865 | 4890048890 | 86%88% | |
| Gossypium hirsutum | cotton | ASM98774v1 | 2019_04 | 6030260297 | 5486455604 | 91%92% | |
| Helianthus annuus | sunflower | HanXRQr1.0 | 2019_04 | 5100151014 | 3856239134 | 76%77% | |
| Hordeum vulgare | barley | IBSC v2 | 2019_04 | 35536 | 27685 | 78% | |
| Juglans regia | walnut | wgs.5d | 2019_04 | 35621 | 32826 | 92% | |
| Lactuca sativa | lettuce | Lsat_Salinas_v7 | 2019_04 | 37806 | 29541 | 78% | |
| Manihot esculenta | cassava | Manihot esculenta v6 | 2019_04 | 3550532801 | 2684927951 | 76%85% | |
| Medicago truncatulaM. truncatula | barrelclover | MedtrA17_4.0 | 2019_04 | 4960049622 | 3224233336 | 65%67% | |
| Musa acuminata | banana | ASM31385v1 | 2019_04 | 3635236358 | 2893629146 | 80% | |
| Nelumbo nucifera | sacred lotus | Chinese Lotus 1.1 | 2019_04 | 23862 | 22620 | 95% | |
| Nicotiana tabacum | tobacco | Ntab-TN90 | 2019_04 | 6127461238 | 5310853982 | 87%88% | |
| Oryza sativa | rice | IRGSP-1.0 | 2019_04 | 4356943848 | 2694427313 | 62% | |
| Ostreococcus tauri | O. tauri | 140606 | 2019_04 | 7743 | 56245724 | 73%74% | |
| Phoenix dactylifera | date palm | DPv01 | 2019_04 | 2551925485 | 2407724230 | 94%95% | |
| Physcomitrella patens | P. patens | Phypa V3 | 2019_04 | 3083730786 | 1957519647 | 63%64% | |
| Populus trichocarpa | black cottonwood | Pop_tri_v3 | 2019_04 | 4101042548 | 3441634605 | 84%81% | |
| Prunus persica | peach | Prunus_persica_NCBIv2 | 2019_04 | 2662026644 | 2298023238 | 86%87% | |
| Ricinus communis | castor bean | JCVI_RCG_1.1 | 2019_04 | 31108 | 21343 | 69% | |
| Selaginella moellendorffii | S. moellendorffii | v1.0 | 2019_04 | 3109733114 | 2099126268 | 68%79% | |
| Setaria italica | foxtail millet | Setaria_italica_v2.0 | 2019_04 | 3526233980 | 2674928017 | 76%82% | |
| Solanum lycopersicum | tomato | SL2.50SL3.0 | 2019_04 | 34637 | 25417 | 73% | |
| Solanum tuberosum | potato | SolTub_3.0 | 2019_04 | 3395238751 | 2604025891 | 77%67% | |
| Sorghum bicolor | sorghum | Sorghum_bicolor_NCBIv3 | 2019_04 | 33707 | 26664 | 79% | |
| Spinacia oleracea | spinach | Spinach-1.0.3 | 2019_04 | 3364821618 | 2624717628 | 78%82% | |
| Theobroma cacao | cocoa | Theobroma_cacao_20110822 | 2019_04 | 2892028954 | 2175922270 | 75%77% | |
| Triticum aestivum | wheat | iwgsc_refseqv1.0 | 2019_04 | 99998102802 | 8912692448 | 89%90% | |
| Vitis vinifera | grape | 12X | 2019_04 | 2985129872 | 2380423943 | 80% | |
| Zea mays | corn | B73 RefGen_v4 | 2019_04 | 3944239430 | 3369534081 | 85%86% | |
| Zostera marina | eelgrass | Zosma_marina.v.2.1 | 2019_04 | 2033020529 | 1726717668 | 85%86% |