This page includes information for the 29 plant genomes included in PhyloGenes v1.0

Detailed information about the reference genomes and proteins from PANTHER 14.0 that are included in PhyloGenes can be found at PANTHERDB.

To cite PANTHER, use this reference.

Scientific Name	Phylogenes Displayed Name	Genome Version	UniProt Reference Version	Total ACTUAL number of protein coding genes (PCG)	Total number of protein coding genes (PCG) in PANTHER families	% of Genes in PANTHER v14
Amborella trichopoda	A. trichopoda	AMTR1.0	2018_04	26308	15685	59.62%
Arabidopsis thaliana	A. thaliana	TAIR10.1	2018_04	27581	24368	88.35%
Brachypodium distachyon	B. distachyon	Brachypodium_distachyon_v3.0	2018_04	26492	23975	90.50%
Brassica rapa subsp. Pekinensis	Chinese cabbage	Brapa_1.0	2018_04	39719	33737	84.94%
Chlamydomonas reinhardtii	C. reinhardtii	Chlamydomonas_reinhardtii_v5.5	2018_04	17608	10573	60.05%
Citrus sinensis	orange	Citrus_sinensis_v1.0	2018_04	26581	21089	79.34%
Cucumis sativus	cucumber	ASM407v2	2018_04	22933	17927	78.17%
Erythranthe guttata	E. guttata	Mimgu1_0	2018_04	26339	23042	87.48%
Glycine max	soybean	Glycine_max_v2.0	2018_04	56626	48302	85.30%
Gossypium hirsutum	cotton	ASM98774v1	2018_04	58466	52336	89.52%
Helianthus annuus	sunflower	HanXRQr1.0	2018_04	49279	36322	73.71%
Hordeum vulgare	barley	IBSC v2	2018_04	34452	24913	72.31%
Medicago truncatula	M. truncatula	MedtrA17_4.0	2018_04	48096	29883	62.13%
Musa acuminata	banana	ASM31385v1	2018_04	35425	27552	77.78%
Nicotiana tabacum	tobacco	Ntab-TN90	2018_04	59342	50517	85.13%
Oryza sativa	rice	IRGSP-1.0	2018_04	43569	26454	60.72%
Ostreococcus tauri	O. tauri	140606	2018_04	7727	5479	70.91%
Phoenix dactylifera	date palm	DPv01	2018_04	24557	22921	93.34%
Physcomitrella patens	P. patens	Phypa V3	2018_04	30837	19132	62.04%
Populus trichocarpa	black cottonwood	Pop_tri_v3	2018_04	41010	34132	83.23%
Prunus persica	peach	Prunus_persica_NCBIv2	2018_04	25514	21587	84.61%
Ricinus communis	castor bean	JCVI_RCG_1.1	2018_04	30207	19859	65.74%
Setaria italica	foxtail millet	Setaria_italica_v2.0	2018_04	34187	25231	73.80%
Solanum lycopersicum	tomato	SL2.50	2018_04	33952	25861	76.17%
Sorghum bicolor	sorghum	Sorghum_bicolor_NCBIv3	2018_04	32590	24763	75.98%
Theobroma cacao	cocoa	Theobroma_cacao_20110822	2018_04	27935	20533	73.50%
Triticum aestivum	wheat	iwgsc_refseqv1.0	2018_04	96567	84371	87.37%
Vitis vinifera	grape	12X	2018_04	29851	23720	79.46%
Zea mays	corn	B73 RefGen_v4	2018_04	39442	32833	83.24%

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