PhyloGenes 5.0 Genomes Stats

This page includes information for the 40 plant genomes included in PhyloGenes v5.0.

Detailed information about the reference genomes and proteins from PANTHER 19.0 that are included in PhyloGenes can be found at PANTHERDB.

To cite PANTHER, use this reference.

Scientific Name	Phylogenes Displayed Name	Genome Version	UniProt Reference Version	Total ACTUAL number of protein coding genes (PCG)	Total number of protein coding genes (PCG) in PANTHER families	% of Genes in PANTHER v19

Scientific Name	Phylogenes Displayed Name	Genome Version	UniProt Reference Version	Total ACTUAL number of protein coding genes (PCG)	Total number of protein coding genes (PCG) in PANTHER families	% of Genes in PANTHER v19
Amborella trichopoda	A. trichopoda	AMTR1.0	2023_05	27327	15740	58%
Arabidopsis thaliana	A. thaliana	TAIR10.1	2023_03	27475	24361	89%
Brachypodium distachyon	purple false brome	Brachypodium_distachyon_v3.0	2023_05	34230	26342	77%
Brassica campestris	field mustard	Brapa_1.0	2023_05	40762	34696	85%
Brassica napus	canola	AST_PRJEB5043_v1	2023_05	57383	41573	72%
Capsicum annuum	bell pepper	ASM51225v2	2023_05	35139	26576	76%
Chlamydomonas reinhardtii	C. reinhardtii	Chlamydomonas_reinhardtii_v5.5	2023_03	17613	12054	68%
Citrus sinensis	orange	Citrus_sinensis_v1.0	2023_05	27934	19705	70%
Cucumis sativus	cucumber	Cucumber_9930_V3	2023_05	23726	18203	77%
Erythranthe guttata	yellow monkeyflower	Mimgu1_0	2023_05	27425	23203	85%
Eucalyptus grandis	flooded gum	Egrandis1_0	2023_05	36474	28917	79%
Glycine max	soybean	Glycine_max_v2.1	2023_05	55853	47057	84%
Gossypium hirsutum	cotton	ASM98774v1	2023_05	60637	55544	92%
Helianthus annuus	sunflower	HanXRQr2.0-SUNRISE	2023_05	80656	44571	55%
Hordeum vulgare subsp. vulgare	barley	MorexV3_pseudomolecules_assembly	2023_05	34193	25970	76%
Juglans regia	walnut	Walnut 2.0	2023_05	32526	30587	94%
Klebsormidium nitens	K. nitens	ASM70883v1	2023_05	16171	9533	59%
Lactuca sativa	lettuce	Lsat_Salinas_v11	2023_05	44154	27932	63%
Manihot esculenta	cassava	M.esculenta_v8	2023_05	31401	26476	84%
Marchantia polymorpha	common liverwort	Marchanta_polymorpha_v1	2023_05	19120	11380	59%
Medicago truncatula	barrel clover	MedtrA17_4.0	2023_05	49598	32142	65%
Musa acuminata subsp. malaccensis	banana	Musa_acuminata_v2	2023_05	34845	29054	83%
Nelumbo nucifera	sacred lotus	Chinese Lotus 1.1	2023_05	23912	22550	94%
Nicotiana tabacum	tobacco	Ntab-TN90	2023_05	61366	53830	88%
Oryza sativa subsp. japonica	rice	IRGSP-1.0	2023_03	43658	24939	57%
Physcomitrella patens	P. patens	Phypa V3	2023_03	31335	19278	61%
Populus trichocarpa	black cottonwood	P.trichocarpa_v4.1	2023_05	42534	32744	77%
Prunus persica	peach	Prunus_persica_NCBIv2	2023_05	26693	22857	86%
Ricinus communis	castor bean	JCVI_RCG_1.1	2023_05	31154	20033	64%
Selaginella moellendorffii	S. moellendorffii	v1.0	2023_05	33117	26013	78%
Setaria italica	foxtail millet	Setaria_italica_v2.0	2023_05	35379	26066	74%
Solanum lycopersicum	tomato	SL3.0	2023_05	34661	24018	69%
Solanum tuberosum	potato	SolTub_3.0	2023_05	38894	24501	63%
Sorghum bicolor	sorghum	Sorghum_bicolor_NCBIv3	2023_05	33746	26444	78%
Spinacia oleracea	spinach	ASM200726v1	2023_05	25345	20932	83%
Theobroma cacao	cocoa	Theobroma_cacao_20110822	2023_05	29032	21966	76%
Triticum aestivum	wheat	iwgsc_refseqv1.0	2023_05	103389	92688	90%
Vitis vinifera	grape	12X	2023_05	29570	21710	73%
Zea mays	corn	Zm-B73-REFERENCE-NAM-5.0	2023_03	39216	28132	72%
Zostera marina	eelgrass	Zosma_marina.v.2.1	2023_05	20338	16492	81%