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If your grant involves the generation of morphological data matrices and/or 2D or 3D images that you would like to deposit at MorphoBank as part of your publication, then MorphoBank can work with you to add text and budget to your grant proposal. Such contributions from the community help to sustain MorphoBank as an important scientific resource.
Curation
Almost all data entered into the PBDB is derived from References. Thus, the suggested funding model for data deposition is based on the number of References you estimate you will need to enter into the PBDB. For a project with less than 500 references, we suggest including a flat fee of $5000. For those projects above 500 references, we suggest the following formula: total amount requested = $4000 * years of project + $2 * number of references. For example, for a project that estimates entering 1000 references over the course of a 3 year project would result in: ($4000 * 3) + ($2 * 1000) = $12000 + $2000 =$14,000. You should characterize this as a fee for your data repository in your Budget Justification.
Data Management Plan
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Data Management Plan
MorphoBank's mission is to be the long term repository for morphological data matrices and associated 2D or 3D images that are described in peer-reviewed publications. While we have funding from NSF to replatform Morphobank's aging software by 2025 and our membership community is growing, MorphoBank can always benefit from research project-based grant support. We are committed to MorphoBank being an open access resource that is accessible to all, regardless of membership status. If you plan to use MorphoBank as a repository for grant funded projects and your institution cannot become a member (for any reason), we ask that you include a line item in your grant to support
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As noted above, you can and should highlight the PBDB in your Data Management Plan (DMP). Some sample boilerplate text is below. The text highlights that PBDB is a long term, NSF funded project with high visibility in the paleontological community worldwide. Your DMP should also mention the funding you are including based on the budget model outlined above as well.
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Paleobiology Database (PBDB) data and metadata are open and available to all, except for those data under embargo for current research projects. PBDB allows users to embargo data for up to 5 year for exclusive use, when it becomes available for all. PBDB makes its data available through its web site (paleobiodb.org) and its fully documented API (paleobiodb.org/data1.2/). All data generated in the proposed project will be made freely available to all users and will not be subject to embargo. PBDB data are available for re-use under CC BY 4.0 International License, which makes the data freely available to all with attribution. PBDB also encourages users of the data to cite the original published sources for the data as well.
PBDB utilizes well-established data system management and maintenance plans. Data are protected by multiple measures including redundant disk storage, offsite mirroring, file system snapshotting, regular tape backup, and duplication of the backup set. PBDB is an actively-funded, community-recognized geoinformatics cyberinfrastructure repository. In the event that future operational funds are not secured, data will be transferred to one or more public academic work repositories. Open-source code for the PBDB API web services and R module are backed up and archived in a public source code repository (Github) as well as in local distributed source control systems.
PBDB also allows researchers to archive data sets that are used for particular research projects and will mint DOIs to uniquely identify these data archives for future reference and re-use. PBDB also allows future researchers to not only access these data archives, but to re-query the PBDB using the exact same parameters to assess how additional future data input has affected the results derived from these archived data sets.
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MorphoBank's work.
You may also wish to cite Cranston et al. 2014 Best Practices for Data Sharing in Phylogenetic Research. PLoS Currents. This paper provides important language on 'best practices' for morphological phylogenetics and emphasizes the importance of planning for data management at the start, not the end, of a research project.
We include some sample text below that can be modified as needed and used in your Data Management Plan.
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MorphoBank (www.morphobank.org) is an open access database and curation platform that makes morphological data matrices that are linked to peer-reviewed publications easily discoverable and freely available for reuse. MorphoBank mints DOIs as the persistent digital identifiers at both the Project and Matrix level. DOIs are issued at the time of project publication and the projects themselves link back to the originating publication. MorphoBank's data and media are backed up on a weekly basis. MorphoBank strongly encourages grant funded users at institutions that are not currently supporting MorphoBank through membership fees to include funding in their grant proposals to help ensure safe, secure, and free distribution of these data for future researchers. Funds requested in this proposal follow the suggested funding model provided by the PBDB.were calculated in collaboration with MorphoBank staff. |
Requests for New Feature Development
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If you have an idea for a new feature that could benefit the MorphoBank community, we are excited to discuss it with you. If the feature is broadly useful and fits MorphoBank's architecture, we can document the specifications, consult with our tech team and estimate the programming hours that development, testing, and release would involve. We may also consult our Scientific Advisory Board to evaluate the general usefulness of the tool to the community. The cost estimate can be included in your grant as a direct expense to be used to fund that development effort. Please contact us at curator@morphobank.org so that we can work together on making your idea a reality.
Curation/ Budgeting for Large Data Sets
There is no charge for researchers to create, modify, and store their morphological data matrices or media in MorphoBank. However, in cases where there are large amounts of image data (hundreds or thousands of media taking many GB of space) that need to be bulk uploaded with associated metadata, we request that you include a budget for this data wrangling and curation work. This may be entered as a fee for the MorphoBank data repository in your Budget Justification. Please contact us for an estimate.