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| Field | Description | Example |
|---|---|---|
| Object Name | The name of the object found in TAIR to be linked | AT4g32520 or ATDMC1.1 |
| Object Type | Type of object. Select from: Locus, Clone, Gene, Polymorphism, GeneticMarker | Locus or GeneticMarker |
| External Web Site - Name | Name of the website that the Base URL refers to | View AraCyc information |
| External Link - Base URL | Base rule for the URL. This is usually the portion of the external link URL before the question mark (?) | http://www.arabidopsis.org: 1555/ARA/NEW-IMAGE |
| External Link - Variable | Variable for the URL. This is usually the portion including and following the question mark (?) | ?type=REACTION-IN-PATHWAY& object=GLYOHMETRANS-RXN |
| Display Name | Name of the link to be displayed. For example, if the link is for an associated marker, you can provide the marker name. | formylTHF biosynthesis |
Gene Class Symbol Registration
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We also provide a preformatted Excel spreadsheet. Please click on the link to download the spreadsheet. Required fields are blue . Fields with an asterisk(*) can have more than one entry separated by a pipe with no intervening spaces (e.g. Ecker,Joseph|Bell,Callum). If submitting a manuscript to The Plant Journal, please include this file in your TPJ submission as a supplemental file.
File Format
| Field | Description | Values/Constraints | Examples |
|---|---|---|---|
| Contact Person/ Submitter * | Name of the person we can contact if we have questions about the annotation | none | Eva Huala |
| Locus Identifier | AGI locus id or name of genetic locus | At#g#####, see AGI coding convention if the gene is new, splitting or merging existing genes | AAAP or At1g10010 |
| Gene Name | symbol-based name of gene, if this exists | See nomenclature guidelines | ETO1 |
| Reference * | PubMedID or citation | PubMed ID can be obtained from TAIR Publication Search or Entrez-PubMed | PubMedID:14576282; Smith (2006) Science 123:23; DOI:10.1111/j.1365-313x. 2010.04399.x; submitted to Plant Journal |
| Gene function, process, location or interacting partner | functional annotation that you'd like to make | For interacting partners, please use the AGI code (At1g01010.1) in addition to the gene name | ser/thr kinase, outer mitochondrial membrane, anther, gynoecium morphogenesis, At1g01010.1(ABC1) |
| Method description | Method and evidence used to support the functional annotation | A list of method descriptions is given as the second sheet of the Excel workbook | enzyme assay, mutant phenotype, transcript levels, yeast two-hybrid-assay |
Gene Structure Additions/Modifications
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